PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088954.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NF-YB
Protein Properties Length: 175aa    MW: 19726.8 Da    PI: 5.0866
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088954.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1634e-515100297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimk++lP  akisk+ak+t+qec++efisfvt+easdkc++e+rkt+ngdd++wal+ lGf++y+e l  yl+kyre+e+e
  XP_010088954.1   5 QEQDRMLPIANVGRIMKQILPPTAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALTALGFDNYAEVLVRYLHKYREAERE 99 
                     79*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     k
  XP_010088954.1 100 K 100
                     7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.9E-514132IPR009072Histone-fold
SuperFamilySSF471135.78E-407129IPR009072Histone-fold
PfamPF008081.4E-261074IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.4E-183856No hitNo description
PROSITE patternPS0068504157IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.4E-185775No hitNo description
PRINTSPR006155.4E-187694No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MVDQQEQDRM LPIANVGRIM KQILPPTAKI SKEAKQTMQE CATEFISFVT GEASDKCHKE  60
NRKTVNGDDI CWALTALGFD NYAEVLVRYL HKYREAEREK ANQISKGSDN NNNNNHITIA  120
DHDEDKDGDS DDRSKSTTGV QQTDQISNII TTSPTLMEFN IIEKGDHHQS LVKSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B2e-42595292Transcription factor HapC (Eurofung)
4g91_B2e-42595292Transcription factor HapC (Eurofung)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088954.11e-130Nuclear transcription factor Y subunit B-4
SwissprotO040271e-55NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLW9QH191e-130W9QH19_9R
STRINGPOPTR_0013s02030.11e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-56nuclear factor Y, subunit B4